Demographic Inference in Polyploids#

Welcome to our documentation for describing how to model demographic history in polyploids using dadi. These docs describe several resources: First, they present the technical/code-related aspects of the simulations and analysis from our associated paper (link/citation below). Second, they describe an example analysis of empirical data collected for allotetraploid Capsella bursa-pastoris. And third, they provide instructions for how to think about parameter conversions for polyploids, as well as a short demo of how one could analyze real data stored in a VCF file.

Documentation#


Citation

Blischak, P. D., M. Sajan, M. S. Barker, and R. N. Gutenkunst. 2022. Demographic History Inference and the Polyploid Continuum. bioRxiv: https://doi.org/10.1101/2022.09.15.508148.

Indices and tables#